Differences in affected pathways as a function of myeloid versus lymphoid leukemia
Pathways, leukemia . | Genes . | P . |
---|---|---|
Ingenuity pathways | ||
Leukocyte extravasation signaling | ||
Lymphoid | Vav32, Pecam1, Vcl, Itk, Plcg2 | < .001 |
Myeloid | Itk | .5 |
ERK/MAPK signaling | ||
Lymphoid | Myc2, Prkar2b, Mycn, Ets12, Plcg2 | < .001 |
Myeloid | Rras2, Raf1 | .16 |
B-cell receptor signaling | ||
Lymphoid | Vav32, Ets12, Plcg2 | .010 |
Myeloid | Rras2, Raf1 | .1 |
Actin cytoskeleton signaling | ||
Lymphoid | Arhgef6, Vav32, Vcl | .032 |
Myeloid | Arhgef6, Rras2, Raf1 | .052 |
FcϵRI signaling | ||
Lymphoid | Vav32, Plcg2 | .035 |
Myeloid | Rras2, Raf1 | .05 |
Natural killer cell signaling | ||
Lymphoid | Vav32, Plcg2 | .043 |
Myeloid | Rras2, Raf1 | .06 |
G-protein–coupled receptor signaling | ||
Lymphoid | Prkar2b, Rasgrp14 | .12 |
Myeloid | Pde1a, Rras2, Raf1 | .035 |
GM-CSF signaling | ||
Lymphoid | Ets12 | .17 |
Myeloid | Rras2, Ccnd1, Raf1 | .001 |
Apoptosis signaling | ||
Lymphoid | Plcg2 | .28 |
Myeloid | Rras2, Bcl2, Raf1 | .007 |
PI3K/AKT signaling | ||
Lymphoid | ||
Myeloid | Rras2, Bcl2, Ccnd1, Raf1 | .002 |
PTEN signaling | ||
Lymphoid | ||
Myeloid | Rras2, Bcl2, Ccnd1, Raf1 | < .001 |
KEGG pathways | ||
Leukocyte transendothelial migration | ||
Lymphoid | Plcg2, Vav32, Vcl, Pecam1, Itk | .003 |
Myeloid | Itk | > .5 |
Dorsal-ventral axis formation | ||
Lymphoid | Ets12, Notch1 | .14 |
Myeloid | Rras2, Raf1, Notch12 | .018 |
Pathways, leukemia . | Genes . | P . |
---|---|---|
Ingenuity pathways | ||
Leukocyte extravasation signaling | ||
Lymphoid | Vav32, Pecam1, Vcl, Itk, Plcg2 | < .001 |
Myeloid | Itk | .5 |
ERK/MAPK signaling | ||
Lymphoid | Myc2, Prkar2b, Mycn, Ets12, Plcg2 | < .001 |
Myeloid | Rras2, Raf1 | .16 |
B-cell receptor signaling | ||
Lymphoid | Vav32, Ets12, Plcg2 | .010 |
Myeloid | Rras2, Raf1 | .1 |
Actin cytoskeleton signaling | ||
Lymphoid | Arhgef6, Vav32, Vcl | .032 |
Myeloid | Arhgef6, Rras2, Raf1 | .052 |
FcϵRI signaling | ||
Lymphoid | Vav32, Plcg2 | .035 |
Myeloid | Rras2, Raf1 | .05 |
Natural killer cell signaling | ||
Lymphoid | Vav32, Plcg2 | .043 |
Myeloid | Rras2, Raf1 | .06 |
G-protein–coupled receptor signaling | ||
Lymphoid | Prkar2b, Rasgrp14 | .12 |
Myeloid | Pde1a, Rras2, Raf1 | .035 |
GM-CSF signaling | ||
Lymphoid | Ets12 | .17 |
Myeloid | Rras2, Ccnd1, Raf1 | .001 |
Apoptosis signaling | ||
Lymphoid | Plcg2 | .28 |
Myeloid | Rras2, Bcl2, Raf1 | .007 |
PI3K/AKT signaling | ||
Lymphoid | ||
Myeloid | Rras2, Bcl2, Ccnd1, Raf1 | .002 |
PTEN signaling | ||
Lymphoid | ||
Myeloid | Rras2, Bcl2, Ccnd1, Raf1 | < .001 |
KEGG pathways | ||
Leukocyte transendothelial migration | ||
Lymphoid | Plcg2, Vav32, Vcl, Pecam1, Itk | .003 |
Myeloid | Itk | > .5 |
Dorsal-ventral axis formation | ||
Lymphoid | Ets12, Notch1 | .14 |
Myeloid | Rras2, Raf1, Notch12 | .018 |
We divided our dataset (Table 2) into two datasets representing RISs identified in lymphoid (65) and myeloid (83) leukemias. A total of 23 RISs were excluded, as they were identified in animals with no clear-cut diagnosis. The 2 individual datasets were subjected to pathway analysis (Table 2). P values reaching significance (< .05) are indicated in bold. Pathways fulfilling the following two criterias are depicted: (1) must have 3 proviral insertions in 3 or more genes in a least one of the 2 groups; (2) must display selectivity (ie, only one experimental group can reach significance; P < .05). Pathways are sorted based on significance. RIS affected in more than one tumor are depicted in bold, and the number of integrations in a given disease subtype is depicted in superscript.