Table 3

Differences in affected pathways as a function of myeloid versus lymphoid leukemia

Pathways, leukemiaGenesP
Ingenuity pathways   
    Leukocyte extravasation signaling   
        Lymphoid Vav32, Pecam1, Vcl, Itk, Plcg2 < .001 
        Myeloid Itk .5 
    ERK/MAPK signaling   
        Lymphoid Myc2, Prkar2b, Mycn, Ets12, Plcg2 < .001 
        Myeloid Rras2, Raf1 .16 
    B-cell receptor signaling   
        Lymphoid Vav32, Ets12, Plcg2 .010 
        Myeloid Rras2, Raf1 .1 
    Actin cytoskeleton signaling   
        Lymphoid Arhgef6, Vav32, Vcl .032 
        Myeloid Arhgef6, Rras2, Raf1 .052 
    FcϵRI signaling   
        Lymphoid Vav32, Plcg2 .035 
        Myeloid Rras2, Raf1 .05 
    Natural killer cell signaling   
        Lymphoid Vav32, Plcg2 .043 
        Myeloid Rras2, Raf1 .06 
    G-protein–coupled receptor signaling   
        Lymphoid Prkar2b, Rasgrp14 .12 
        Myeloid Pde1a, Rras2, Raf1 .035 
    GM-CSF signaling   
        Lymphoid Ets12 .17 
        Myeloid Rras2, Ccnd1, Raf1 .001 
    Apoptosis signaling   
        Lymphoid Plcg2 .28 
        Myeloid Rras2, Bcl2, Raf1 .007 
    PI3K/AKT signaling   
        Lymphoid   
        Myeloid Rras2, Bcl2, Ccnd1, Raf1 .002 
    PTEN signaling   
        Lymphoid   
        Myeloid Rras2, Bcl2, Ccnd1, Raf1 < .001 
KEGG pathways   
    Leukocyte transendothelial migration   
        Lymphoid Plcg2, Vav32, Vcl, Pecam1, Itk .003 
        Myeloid Itk > .5 
    Dorsal-ventral axis formation   
        Lymphoid Ets12, Notch1 .14 
        Myeloid Rras2, Raf1, Notch12 .018 
Pathways, leukemiaGenesP
Ingenuity pathways   
    Leukocyte extravasation signaling   
        Lymphoid Vav32, Pecam1, Vcl, Itk, Plcg2 < .001 
        Myeloid Itk .5 
    ERK/MAPK signaling   
        Lymphoid Myc2, Prkar2b, Mycn, Ets12, Plcg2 < .001 
        Myeloid Rras2, Raf1 .16 
    B-cell receptor signaling   
        Lymphoid Vav32, Ets12, Plcg2 .010 
        Myeloid Rras2, Raf1 .1 
    Actin cytoskeleton signaling   
        Lymphoid Arhgef6, Vav32, Vcl .032 
        Myeloid Arhgef6, Rras2, Raf1 .052 
    FcϵRI signaling   
        Lymphoid Vav32, Plcg2 .035 
        Myeloid Rras2, Raf1 .05 
    Natural killer cell signaling   
        Lymphoid Vav32, Plcg2 .043 
        Myeloid Rras2, Raf1 .06 
    G-protein–coupled receptor signaling   
        Lymphoid Prkar2b, Rasgrp14 .12 
        Myeloid Pde1a, Rras2, Raf1 .035 
    GM-CSF signaling   
        Lymphoid Ets12 .17 
        Myeloid Rras2, Ccnd1, Raf1 .001 
    Apoptosis signaling   
        Lymphoid Plcg2 .28 
        Myeloid Rras2, Bcl2, Raf1 .007 
    PI3K/AKT signaling   
        Lymphoid   
        Myeloid Rras2, Bcl2, Ccnd1, Raf1 .002 
    PTEN signaling   
        Lymphoid   
        Myeloid Rras2, Bcl2, Ccnd1, Raf1 < .001 
KEGG pathways   
    Leukocyte transendothelial migration   
        Lymphoid Plcg2, Vav32, Vcl, Pecam1, Itk .003 
        Myeloid Itk > .5 
    Dorsal-ventral axis formation   
        Lymphoid Ets12, Notch1 .14 
        Myeloid Rras2, Raf1, Notch12 .018 

We divided our dataset (Table 2) into two datasets representing RISs identified in lymphoid (65) and myeloid (83) leukemias. A total of 23 RISs were excluded, as they were identified in animals with no clear-cut diagnosis. The 2 individual datasets were subjected to pathway analysis (Table 2). P values reaching significance (< .05) are indicated in bold. Pathways fulfilling the following two criterias are depicted: (1) must have 3 proviral insertions in 3 or more genes in a least one of the 2 groups; (2) must display selectivity (ie, only one experimental group can reach significance; P < .05). Pathways are sorted based on significance. RIS affected in more than one tumor are depicted in bold, and the number of integrations in a given disease subtype is depicted in superscript.

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