Table 4

Cluster 3 selected up-regulated genes

Gene symbolGene nameFold changeP
FOSL1 FOS-like antigen 1 3.80 < .001 
SERPINB13 Serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 13 3.66 < .001 
MMP12 Matrix metalloproteinase 12 (macrophage elastase) 3.41 .004 
SERPINB4 Serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 4 3.33 < .001 
EVA1 Epithelial V–like antigen 1 3.12 < .001 
SELE Selectin E (endothelial adhesion molecule 1) 3.08 < .001 
IL13RA2 Interleukin-13 receptor α2 3.05 .006 
TP73L Tumor protein p73–like 2.94 < .001 
FGFBP1 Fibroblast growth factor–binding protein 1 2.86 < .001 
KRT17 Keratin 17 2.71 < .001 
IL1RN Interleukin-1 receptor antagonist 2.58 < .001 
CD24 CD24 antigen (small-cell lung carcinoma cluster 4 antigen) 2.57 < .001 
KRT16 Keratin 16 (focal nonepidermolytic palmoplantar keratoderma) 2.54 < .001 
TNFAIP6 Tumor necrosis factor α-induced protein 6 2.51 .006 
ID1 Inhibitor of DNA binding 1, dominant-negative helix-loop-helix protein 2.38 < .001 
SERPINB3 Serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 3 2.36 < .001 
DUSP1 Dual specificity phosphatase 1 2.24 .001 
CCL2 Chemokine (C-C motif) ligand 2 2.22 .002 
ITGA6 Integrin α6 2.14 < .001 
CEACAM1 Carcinoembryonic antigen-related cell adhesion molecule 1 2.07 .002 
SOCS3 Suppressor of cytokine signaling 3 2.00 .001 
LTB4R Leukotriene B4 receptor 1.95 < .001 
DUSP3 Dual specificity phosphatase 3 (vaccinia virus phosphatase VH1–related) 1.91 < .001 
ITGB4 Integrin β4 1.89 < .001 
KRT6A, B, C, E Keratin 6A, keratin 6B, keratin 6C, keratin 6E 1.89 < .001 
JAG1 Jagged 1 (Alagille syndrome) 1.88 < .001 
VEGF Vascular endothelial growth factor 1.88 < .001 
IVL Involucrin 1.87 .002 
MCL1 Myeloid cell leukemia sequence 1 (BCL2-related) 1.82 .008 
TGFA Transforming growth factor α 1.80 .004 
SERPINB1 Serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 1 1.79 .001 
S100A2 S100 calcium-binding protein A2 1.79 < .001 
YES1 v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 1.77 < .001 
FGFR2 Fibroblast growth factor receptor 2 1.72 < .001 
TNFRSF21 Tumor necrosis factor receptor superfamily, member 21 1.69 < .001 
RAB6A RAB6A, member RAS oncogene family 1.69 .003 
JUNB jun B proto-oncogene 1.68 < .001 
WNT5A Wingless-type MMTV integration site family, member 5A 1.65 .006 
Gene symbolGene nameFold changeP
FOSL1 FOS-like antigen 1 3.80 < .001 
SERPINB13 Serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 13 3.66 < .001 
MMP12 Matrix metalloproteinase 12 (macrophage elastase) 3.41 .004 
SERPINB4 Serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 4 3.33 < .001 
EVA1 Epithelial V–like antigen 1 3.12 < .001 
SELE Selectin E (endothelial adhesion molecule 1) 3.08 < .001 
IL13RA2 Interleukin-13 receptor α2 3.05 .006 
TP73L Tumor protein p73–like 2.94 < .001 
FGFBP1 Fibroblast growth factor–binding protein 1 2.86 < .001 
KRT17 Keratin 17 2.71 < .001 
IL1RN Interleukin-1 receptor antagonist 2.58 < .001 
CD24 CD24 antigen (small-cell lung carcinoma cluster 4 antigen) 2.57 < .001 
KRT16 Keratin 16 (focal nonepidermolytic palmoplantar keratoderma) 2.54 < .001 
TNFAIP6 Tumor necrosis factor α-induced protein 6 2.51 .006 
ID1 Inhibitor of DNA binding 1, dominant-negative helix-loop-helix protein 2.38 < .001 
SERPINB3 Serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 3 2.36 < .001 
DUSP1 Dual specificity phosphatase 1 2.24 .001 
CCL2 Chemokine (C-C motif) ligand 2 2.22 .002 
ITGA6 Integrin α6 2.14 < .001 
CEACAM1 Carcinoembryonic antigen-related cell adhesion molecule 1 2.07 .002 
SOCS3 Suppressor of cytokine signaling 3 2.00 .001 
LTB4R Leukotriene B4 receptor 1.95 < .001 
DUSP3 Dual specificity phosphatase 3 (vaccinia virus phosphatase VH1–related) 1.91 < .001 
ITGB4 Integrin β4 1.89 < .001 
KRT6A, B, C, E Keratin 6A, keratin 6B, keratin 6C, keratin 6E 1.89 < .001 
JAG1 Jagged 1 (Alagille syndrome) 1.88 < .001 
VEGF Vascular endothelial growth factor 1.88 < .001 
IVL Involucrin 1.87 .002 
MCL1 Myeloid cell leukemia sequence 1 (BCL2-related) 1.82 .008 
TGFA Transforming growth factor α 1.80 .004 
SERPINB1 Serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 1 1.79 .001 
S100A2 S100 calcium-binding protein A2 1.79 < .001 
YES1 v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 1.77 < .001 
FGFR2 Fibroblast growth factor receptor 2 1.72 < .001 
TNFRSF21 Tumor necrosis factor receptor superfamily, member 21 1.69 < .001 
RAB6A RAB6A, member RAS oncogene family 1.69 .003 
JUNB jun B proto-oncogene 1.68 < .001 
WNT5A Wingless-type MMTV integration site family, member 5A 1.65 .006 

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