Table 2.

Affymetrix U133A microarray fluorescences in arbitrary units of selected genes with indication of the Affymetrix probe set number

P, Mann-Whitney U test
U133A
Fluorescence median
vs M3v
vs M1 + M2
vs M4 + M5
vs T-ALL
vs M4 + M5
Gene
Probe set
M3 + M3v
M3
M3v
M1 + M2
M4 + M5
T-ALL
M3
M3 + M3v
M3
M3v
M3 + M3v
M3
M3v
M3 + M3v
M3
M3v
M1 + M2
CD45_PTPRC  212587_s_at   711   460   1381   978   1333   670   < .001   NS   < .001   .038   < .001   < .001   NS   NS   .004   .008   .001  
CD45_PTPRC  207238_s_at   808   582   1394   1038   1678   895   < .001   .044   < .001   NS   < .001   < .001   .046   NS   .003   NS   < .001  
CD34  209543_s_at   117   111   154   335   139   143   .043   .001   .001   NS   NS   NS   NS   NS   NS   NS   < .001  
MYB  204798_at   3642   3951   3469   2399   2146   3761   NS   .002   .004   NS   .002   .003   .048   NS   NS   NS   NS  
SMARCA4  212520_s_at   238   183   324   277   223   397   .002   NS   .004   NS   NS   NS   .044   .001   < .001   NS   NS  
SMARCA4  214728_x_at   1109   963   1391   1024   939   1286   .013   .028   NS   .001   .006   NS   < .001   NS   .009   NS   NS  
SMARCA4  208794_s_at   794   682   1035   735   715   1136   .027   NS   NS   .006   NS   NS   .003   < .001   < .001   NS   NS  
SMARCA4  215714_s_at   672   584   756   492   506   615   .04   .001   NS   < .001   .007   NS   .001   NS   NS   NS   NS  
SMARCA4  208793_x_at   241   220   280   186   188   203   NS   .002   NS   .001   .007   NS   .004   NS   NS   NS   NS  
SMARCA4  213720_s_at   901   785   1071   913   703   1255   NS   NS   NS   NS   NS   NS   .034   < .001   < .001   .030   .026  
NKG7  213915_at   854   722   1013   521   630   242   NS   < .001   .049   < .001   .008   NS   .003   < .001   < .001   < .001   NS  
CD2  205831_at   253   184   416   136   199   1267   .016   < .001   .002   < .001   .036   NS   .001   < .001   < .001   .027   < .001  
PTCRA  211252_x_at   300   283   315   271   278   512   NS   NS   NS   .037   NS   NS   NS   < .001   < .001   < .001   NS  
PTCRA  215492_x_at   257   255   257   214   250   450   NS   .015   NS   .020   NS   NS   NS   < .001   < .001   .003   .047  
TCRG  209813_x_at   3836   3568   5794   2072   2361   1199   NS   < .001   .004   < .001   < .001   .001   < .001   < .001   .001   < .001   NS  
TCRG  211144_x_at   3464   3286   5552   1899   1987   1091   NS   < .001   .002   < .001   < .001   .001   < .001   < .001   .001   < .001   NS  
TCRG  215806_x_at   4003   3948   6048   2429   2610   1694   NS   < .001   .003   < .001   < .001   .001   < .001   < .001   .001   < .001   NS  
TCRG  216920_s_at   4895   4841   5336   2629   2651   1695   NS   < .001   .006   < .001   < .001   < .001   < .001   < .001   .002   < .001   NS  
TCRG  216298_at   56   48   60   56   59   52   .037   NS   NS   NS   NS   NS   NS   NS   NS   NS   NS  
ZNFNIA1
 		 205039_s_at
 		 670
 		 669
 		 823
 		 570
 		 623
 		 646
 		 NS
 		 .010
 		 NS
 		 .005
 		 NS
 		 NS
 		 NS
 		 NS
 		 NS
 		 NS
 		 .024
 
P, Mann-Whitney U test
U133A
Fluorescence median
vs M3v
vs M1 + M2
vs M4 + M5
vs T-ALL
vs M4 + M5
Gene
Probe set
M3 + M3v
M3
M3v
M1 + M2
M4 + M5
T-ALL
M3
M3 + M3v
M3
M3v
M3 + M3v
M3
M3v
M3 + M3v
M3
M3v
M1 + M2
CD45_PTPRC  212587_s_at   711   460   1381   978   1333   670   < .001   NS   < .001   .038   < .001   < .001   NS   NS   .004   .008   .001  
CD45_PTPRC  207238_s_at   808   582   1394   1038   1678   895   < .001   .044   < .001   NS   < .001   < .001   .046   NS   .003   NS   < .001  
CD34  209543_s_at   117   111   154   335   139   143   .043   .001   .001   NS   NS   NS   NS   NS   NS   NS   < .001  
MYB  204798_at   3642   3951   3469   2399   2146   3761   NS   .002   .004   NS   .002   .003   .048   NS   NS   NS   NS  
SMARCA4  212520_s_at   238   183   324   277   223   397   .002   NS   .004   NS   NS   NS   .044   .001   < .001   NS   NS  
SMARCA4  214728_x_at   1109   963   1391   1024   939   1286   .013   .028   NS   .001   .006   NS   < .001   NS   .009   NS   NS  
SMARCA4  208794_s_at   794   682   1035   735   715   1136   .027   NS   NS   .006   NS   NS   .003   < .001   < .001   NS   NS  
SMARCA4  215714_s_at   672   584   756   492   506   615   .04   .001   NS   < .001   .007   NS   .001   NS   NS   NS   NS  
SMARCA4  208793_x_at   241   220   280   186   188   203   NS   .002   NS   .001   .007   NS   .004   NS   NS   NS   NS  
SMARCA4  213720_s_at   901   785   1071   913   703   1255   NS   NS   NS   NS   NS   NS   .034   < .001   < .001   .030   .026  
NKG7  213915_at   854   722   1013   521   630   242   NS   < .001   .049   < .001   .008   NS   .003   < .001   < .001   < .001   NS  
CD2  205831_at   253   184   416   136   199   1267   .016   < .001   .002   < .001   .036   NS   .001   < .001   < .001   .027   < .001  
PTCRA  211252_x_at   300   283   315   271   278   512   NS   NS   NS   .037   NS   NS   NS   < .001   < .001   < .001   NS  
PTCRA  215492_x_at   257   255   257   214   250   450   NS   .015   NS   .020   NS   NS   NS   < .001   < .001   .003   .047  
TCRG  209813_x_at   3836   3568   5794   2072   2361   1199   NS   < .001   .004   < .001   < .001   .001   < .001   < .001   .001   < .001   NS  
TCRG  211144_x_at   3464   3286   5552   1899   1987   1091   NS   < .001   .002   < .001   < .001   .001   < .001   < .001   .001   < .001   NS  
TCRG  215806_x_at   4003   3948   6048   2429   2610   1694   NS   < .001   .003   < .001   < .001   .001   < .001   < .001   .001   < .001   NS  
TCRG  216920_s_at   4895   4841   5336   2629   2651   1695   NS   < .001   .006   < .001   < .001   < .001   < .001   < .001   .002   < .001   NS  
TCRG  216298_at   56   48   60   56   59   52   .037   NS   NS   NS   NS   NS   NS   NS   NS   NS   NS  
ZNFNIA1
 		 205039_s_at
 		 670
 		 669
 		 823
 		 570
 		 623
 		 646
 		 NS
 		 .010
 		 NS
 		 .005
 		 NS
 		 NS
 		 NS
 		 NS
 		 NS
 		 NS
 		 .024
 

Median values are indicated according to the leukemia category. Statistical analysis was performed using a Mann-Whitney U test for an identical hypothesis. NS indicates not significant (P > .05)

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