Table 1.

Genes significantly associated with MRD on day 46

Probe set
Representative public ID
Gene title
Genes underexpressed in MRD+   
    206502_s_at  NM_002196  Insulinoma-associated 1  
    217281_x_at   AJ239383   IgM rheumatoid factor RF-TT9, variable heavy chain  
    217098_s_at   Z98745   Zinc finger protein 96  
    218736_s_at  NM_017734  Palmdelphin  
    207894_s_at  NM_020552  T-cell leukemia/lymphoma 6  
    220657_at  NM_018143  Kelch-like 11 (Drosophila)  
    206142_at  NM_003436  Zinc finger protein 135 (clone pHZ-17)  
    203702_s_at   AL043927   Tubulin tyrosine ligase-like family, member 4* 
    207940_x_at  NM_001840  Cannabinoid receptor 1 (brain)  
    207979_s_at  NM_004931  CD8 beta polypeptide 1* 
    218986_s_at  NM_017631  Hypothetical protein FLJ20035 
    215717_s_at   X62009   Fibrillin 2 (congenital contractural arachnodactyly)  
    212419_at   AA131324   Chromosome 10 open reading frame 56  
    219364_at  NM_024119  Likely ortholog of mouse D11Igp2  
    209760_at   AL136932   KIAA0922 protein* 
    218033_s_at  NM_003498  Stannin  
    216444_at   AK024138   SMAD-specific E3 ubiquitin protein ligase 2  
    203276_at  NM_005573  Lamin B1* 
    209502_s_at   BC002495   BAI1-associated protein 2  
    205888_s_at   AI962693   Jak and microtubule interacting protein 2  
    203422_at  NM_002691  Polymerase (DNA directed), delta 1, catalytic subunit 125 kDa  
    211717_at   BC005853   Ankyrin repeat domain 40  
    203963_at  NM_001218  Carbonic anhydrase XII  
    218115_at  NM_018154  ASF1 antisilencing function 1 homolog B (S cerevisiae)* 
    219165_at  NM_021630  PDZ and LIM domain 2 (mystique)  
    209499_x_at   BF448647   Tumor necrosis factor (ligand) superfamily, member 13  
    202326_at  NM_006709  Euchromatic histone-lysine N-methyltransferase 2* 
    222201_s_at   AB037736   CASP8-associated protein 2* 
    38158_at   D79987   Extra spindle poles-like 1 (S cerevisiae) 
    218586_at  NM_018270  Chromosome 20 open reading frame 20  
    204804_at  NM_003141  Tripartite motif-containing 21  
    204599_s_at  NM_006428  Mitochondrial ribosomal protein L28  
Genes overexpressed in MRD+   
    201429_s_at  NM_000998  Ribosomal protein L37a  
    200025_s_at  NM_000988  Ribosomal protein L27  
    200034_s_at  NM_000970  Ribosomal protein L6  
    200038_s_at  NM_000985  Ribosomal protein L17  
    200949_x_at  NM_001023  Ribosomal protein S20  
    212042_x_at   BG389744   Ribosomal protein L7  
    200716_x_at  NM_012423  Ribosomal protein L13a  
    208904_s_at   BC000354   Ribosomal protein S28  
    208856_x_at   BC003655   Ribosomal protein, large, P0  
    216520_s_at   AF072098   Tumor protein, translationally controlled 1  
    200019_s_at  NM_001997  Ribosomal protein S30  
    200927_s_at   AA919115   RAB14, member RAS oncogene family  
    202649_x_at  NM_001022  Ribosomal protein S19  
    200937_s_at  NM_000969  Ribosomal protein L5  
    211927_x_at   BE963164   Eukaryotic translation elongation factor 1 gamma  
    212773_s_at   BG165094   Translocase of outer mitochondrial membrane 20 homolog (yeast)  
    213890_x_at   AI200589   Ribosomal protein S16  
    208724_s_at   BC000905   RAB1A, member RAS oncogene family  
    200081_s_at   BE741754   Ribosomal protein S6  
    200005_at  NM_003753  Eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67 kDa  
    217915_s_at  NM_016304  Chromosome 15 open reading frame 15  
    218268_at  NM_022771  TBC1 domain family, member 15  
    217747_s_at  NM_001013  Ribosomal protein S9  
    201259_s_at   AI768845   Synaptophysin-like 1  
    217719_at  NM_016091  Eukaryotic translation initiation factor 3, subunit 6 interacting protein  
    211937_at  NM_001417  Eukaryotic translation initiation factor 4B  
    218041_x_at  NM_018573  Solute carrier family 38, member 2  
    214351_x_at   AA789278   Ribosomal protein L13  
    221726_at   BE250348   Ribosomal protein L22  
    204102_s_at  NM_001961  Eukaryotic translation elongation factor 2  
    209510_at   AF064801   Ring finger protein 139  
    200024_at  NM_001009  Ribosomal protein S5  
    201337_s_at  NM_004781  Vesicle-associated membrane protein 3 (cellubrevin)* 
    200632_s_at  NM_006096  N-myc downstream regulated gene 1  
    218084_x_at  NM_014164  FXYD domain containing ion transport regulator 5* 
    212202_s_at   BG493972   DKFZP564G2022 protein  
    221646_s_at   AF267859   Zinc finger, DHHC-type containing 11  
    203544_s_at  NM_003473  Signal transducing adaptor molecule 1* 
    218562_s_at  NM_018202  Transmembrane protein 57  
    206890_at  NM_005535  Interleukin 12 receptor, beta 1  
    204426_at  NM_006815  Coated vesicle membrane protein  
    208330_at  NM_021926  Aristaless-like homeobox 4  
    221718_s_at   M90360   A kinase (PRKA) anchor protein 13  
    209288_s_at   AL136842   CDC42 effector protein (Rho GTPase binding) 3* 
    202393_s_at  NM_005655  Kruppel-like factor 10  
    209732_at   BC005254   C-type lectin domain family 2, member B* 
    209795_at   L07555   CD69* 
    212509_s_at   BF968134   Matrix-remodeling associated 7* 
    209543_s_at   M81104   CD34  
    213075_at   AL050002   Olfactomedin-like 2A* 
    201904_s_at   BF031714   CTD small phosphatase-like  
    215177_s_at   AV733308   Integrin, alpha 6* 
    201325_s_at
 		NM_001423
 		 Epithelial membrane protein 1*
 
Probe set
Representative public ID
Gene title
Genes underexpressed in MRD+   
    206502_s_at  NM_002196  Insulinoma-associated 1  
    217281_x_at   AJ239383   IgM rheumatoid factor RF-TT9, variable heavy chain  
    217098_s_at   Z98745   Zinc finger protein 96  
    218736_s_at  NM_017734  Palmdelphin  
    207894_s_at  NM_020552  T-cell leukemia/lymphoma 6  
    220657_at  NM_018143  Kelch-like 11 (Drosophila)  
    206142_at  NM_003436  Zinc finger protein 135 (clone pHZ-17)  
    203702_s_at   AL043927   Tubulin tyrosine ligase-like family, member 4* 
    207940_x_at  NM_001840  Cannabinoid receptor 1 (brain)  
    207979_s_at  NM_004931  CD8 beta polypeptide 1* 
    218986_s_at  NM_017631  Hypothetical protein FLJ20035 
    215717_s_at   X62009   Fibrillin 2 (congenital contractural arachnodactyly)  
    212419_at   AA131324   Chromosome 10 open reading frame 56  
    219364_at  NM_024119  Likely ortholog of mouse D11Igp2  
    209760_at   AL136932   KIAA0922 protein* 
    218033_s_at  NM_003498  Stannin  
    216444_at   AK024138   SMAD-specific E3 ubiquitin protein ligase 2  
    203276_at  NM_005573  Lamin B1* 
    209502_s_at   BC002495   BAI1-associated protein 2  
    205888_s_at   AI962693   Jak and microtubule interacting protein 2  
    203422_at  NM_002691  Polymerase (DNA directed), delta 1, catalytic subunit 125 kDa  
    211717_at   BC005853   Ankyrin repeat domain 40  
    203963_at  NM_001218  Carbonic anhydrase XII  
    218115_at  NM_018154  ASF1 antisilencing function 1 homolog B (S cerevisiae)* 
    219165_at  NM_021630  PDZ and LIM domain 2 (mystique)  
    209499_x_at   BF448647   Tumor necrosis factor (ligand) superfamily, member 13  
    202326_at  NM_006709  Euchromatic histone-lysine N-methyltransferase 2* 
    222201_s_at   AB037736   CASP8-associated protein 2* 
    38158_at   D79987   Extra spindle poles-like 1 (S cerevisiae) 
    218586_at  NM_018270  Chromosome 20 open reading frame 20  
    204804_at  NM_003141  Tripartite motif-containing 21  
    204599_s_at  NM_006428  Mitochondrial ribosomal protein L28  
Genes overexpressed in MRD+   
    201429_s_at  NM_000998  Ribosomal protein L37a  
    200025_s_at  NM_000988  Ribosomal protein L27  
    200034_s_at  NM_000970  Ribosomal protein L6  
    200038_s_at  NM_000985  Ribosomal protein L17  
    200949_x_at  NM_001023  Ribosomal protein S20  
    212042_x_at   BG389744   Ribosomal protein L7  
    200716_x_at  NM_012423  Ribosomal protein L13a  
    208904_s_at   BC000354   Ribosomal protein S28  
    208856_x_at   BC003655   Ribosomal protein, large, P0  
    216520_s_at   AF072098   Tumor protein, translationally controlled 1  
    200019_s_at  NM_001997  Ribosomal protein S30  
    200927_s_at   AA919115   RAB14, member RAS oncogene family  
    202649_x_at  NM_001022  Ribosomal protein S19  
    200937_s_at  NM_000969  Ribosomal protein L5  
    211927_x_at   BE963164   Eukaryotic translation elongation factor 1 gamma  
    212773_s_at   BG165094   Translocase of outer mitochondrial membrane 20 homolog (yeast)  
    213890_x_at   AI200589   Ribosomal protein S16  
    208724_s_at   BC000905   RAB1A, member RAS oncogene family  
    200081_s_at   BE741754   Ribosomal protein S6  
    200005_at  NM_003753  Eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67 kDa  
    217915_s_at  NM_016304  Chromosome 15 open reading frame 15  
    218268_at  NM_022771  TBC1 domain family, member 15  
    217747_s_at  NM_001013  Ribosomal protein S9  
    201259_s_at   AI768845   Synaptophysin-like 1  
    217719_at  NM_016091  Eukaryotic translation initiation factor 3, subunit 6 interacting protein  
    211937_at  NM_001417  Eukaryotic translation initiation factor 4B  
    218041_x_at  NM_018573  Solute carrier family 38, member 2  
    214351_x_at   AA789278   Ribosomal protein L13  
    221726_at   BE250348   Ribosomal protein L22  
    204102_s_at  NM_001961  Eukaryotic translation elongation factor 2  
    209510_at   AF064801   Ring finger protein 139  
    200024_at  NM_001009  Ribosomal protein S5  
    201337_s_at  NM_004781  Vesicle-associated membrane protein 3 (cellubrevin)* 
    200632_s_at  NM_006096  N-myc downstream regulated gene 1  
    218084_x_at  NM_014164  FXYD domain containing ion transport regulator 5* 
    212202_s_at   BG493972   DKFZP564G2022 protein  
    221646_s_at   AF267859   Zinc finger, DHHC-type containing 11  
    203544_s_at  NM_003473  Signal transducing adaptor molecule 1* 
    218562_s_at  NM_018202  Transmembrane protein 57  
    206890_at  NM_005535  Interleukin 12 receptor, beta 1  
    204426_at  NM_006815  Coated vesicle membrane protein  
    208330_at  NM_021926  Aristaless-like homeobox 4  
    221718_s_at   M90360   A kinase (PRKA) anchor protein 13  
    209288_s_at   AL136842   CDC42 effector protein (Rho GTPase binding) 3* 
    202393_s_at  NM_005655  Kruppel-like factor 10  
    209732_at   BC005254   C-type lectin domain family 2, member B* 
    209795_at   L07555   CD69* 
    212509_s_at   BF968134   Matrix-remodeling associated 7* 
    209543_s_at   M81104   CD34  
    213075_at   AL050002   Olfactomedin-like 2A* 
    201904_s_at   BF031714   CTD small phosphatase-like  
    215177_s_at   AV733308   Integrin, alpha 6* 
    201325_s_at
 		NM_001423
 		 Epithelial membrane protein 1*
 
*

Genes also associated with MRD on day 19.

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