Table 1.

Specifications of the MS detection systems used and summary of the number of membrane proteins identified by using different extraction methods and 2 different databases




IPI Human, no.

NCBI Mammalia, no.
Not treated   35   ND  
EtOH   95   93  
Carbonate saturated   
    Na2CO3 + EtOH   48   36  
    Na2CO3 × 2   97   87  
    Na2CO3 × 2 + EtOH   69   61  
Carbonate   
    Na2CO3 + EtOH   108   89  
    Na2CO3 × 2   76   75  
    Na2CO3 × 2 + EtOH   117   106  
Gel (combo)
 
144
 
ND
 



IPI Human, no.

NCBI Mammalia, no.
Not treated   35   ND  
EtOH   95   93  
Carbonate saturated   
    Na2CO3 + EtOH   48   36  
    Na2CO3 × 2   97   87  
    Na2CO3 × 2 + EtOH   69   61  
Carbonate   
    Na2CO3 + EtOH   108   89  
    Na2CO3 × 2   76   75  
    Na2CO3 × 2 + EtOH   117   106  
Gel (combo)
 
144
 
ND
 

Number of identified peptides by using different extraction methods and 2 different databases for annotation.

ND indicates not determined.

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