Table 1.

Correlation of transcriptomic and proteomic comparisons of LSK+ and LSK cells



mRNA (Affymetrix array)
Protein (iTRAQ)
Up
No change
Down
Up   35   27   1  
No change   27   325   22  
Down
 
0
 
47
 
27
 


mRNA (Affymetrix array)
Protein (iTRAQ)
Up
No change
Down
Up   35   27   1  
No change   27   325   22  
Down
 
0
 
47
 
27
 

Shown are relative changes in mRNA levels for all of the proteins shown to be differentially expressed by iTRAQ labeling and for proteins shown to have no change between the 2 cell types where more than 3 peptides were identified and where the analysis software reported a hit against the Swiss-Prot, TrEMBL, or RefSeq databases. Seven protein changes and 6 unchanged proteins were scored “absent” on the microarray analysis. One protein change could not be matched to the array data.

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