Table 2.

Observed pre-mRNA intermediates and deduced preferential order of splicing

IntronsPrimer pairIntrons splicedSize, bpOrder
1 vs 2 None 1309 2 before 1  
 Intron 2 360  
2 vs 3 None 905 (2 before 3) 
 Intron 2 446 or  
  None 1463 3 before 2 
  Intron 3 331  
3 vs 4 None 1530 3 before 4  
 Intron 3 398  
  None 1181  
1 vs 3 None 2052 3 before 1  
 Intron 2 1593  
  Introns 1 + 2* 524*  
  Introns 2 + 3 402  
2 vs 4 Introns 2 + 3 524 2 before 4 
 Intron 3 1245  
1 vs 4 Intron 3 2130 4 before 1  
 Introns 1 + 2 + 3 603  
  Introns 2 + 3 + 4 731  
IntronsPrimer pairIntrons splicedSize, bpOrder
1 vs 2 None 1309 2 before 1  
 Intron 2 360  
2 vs 3 None 905 (2 before 3) 
 Intron 2 446 or  
  None 1463 3 before 2 
  Intron 3 331  
3 vs 4 None 1530 3 before 4  
 Intron 3 398  
  None 1181  
1 vs 3 None 2052 3 before 1  
 Intron 2 1593  
  Introns 1 + 2* 524*  
  Introns 2 + 3 402  
2 vs 4 Introns 2 + 3 524 2 before 4 
 Intron 3 1245  
1 vs 4 Intron 3 2130 4 before 1  
 Introns 1 + 2 + 3 603  
  Introns 2 + 3 + 4 731  
*

Transcripts that may result from minor pathways of splicing involving intron 1 (see “Discussion”).

The preferential splice order between intron 3 and intron 2 was determined by analyzing nuclear RNA intermediates (Figure 5B).

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