Early differentiation genes: top 50 differentially expressed genes in comparison of CD19-enriched tonsil BCs and CD138-enriched tonsil PCs
Accession no. . | Symbol . | Function . | Quantitative gene expression . | ||
---|---|---|---|---|---|
TBCs . | TPCs . | BPCs . | |||
U60519 | CASP10 | Apoptosis | − | + | ++ |
X53586 | ITGA6 | Adhesion | − | + | ++ |
U04735 | STCH | Chaperone | + | ++ | ++ |
L13689 | BMI1 | Transcription; repressor; PcG | + | ++ | +++ |
L34657 | PECAM1 | Adhesion | + | ++ | +++ |
U52682 | IRF4 | Transcription; IRF family | + | +++ | +++ |
M31627 | XBP1 | Transcription; bZip family | +++ | ++++ | ++++ |
AB000410 | OGG1 | DNA glycosylase | + | − | − |
D87432 | SLC7A6 | Solute transporter | + | − | − |
J04101 | ETS1 | Transcription; etsfamily | + | − | − |
L38820 | CDID | Immunity | + | − | − |
M28827 | CDIC | Immunity | + | − | − |
M55542 | GBP1 | Signaling; GTP binding | + | − | − |
M81182 | ABCD3 | ABC transporter | + | − | − |
M85085 | CSTF2 | mRNA cleavage stimulating factor | + | − | − |
U74612 | FOXM1 | Transcription; fork-head family | + | − | − |
U84720 | RAE1 | RNA export | + | − | − |
V00574 | HRAS | Signaling; GTP-binding protein | + | − | − |
X02910 | TNF | Signaling; TNFα | + | − | − |
X63741 | EGR3 | Transcription;egr family | + | − | − |
X93512 | TERF2 | Telomere repeat binding protein | + | − | − |
Z36714 | CCNF | Cell cycle; cyclin F | + | − | − |
AB000409 | MNK1 | Signaling; kinase | + | − | + |
M33308 | VCL | Cytoskeleton | + | − | ++ |
D16480 | HADHA | Mitochondrial oxidation | ++ | − | − |
M63488 | RPA1 | DNA replication/repair | ++ | − | − |
U03911 | MSH2 | DNA repair | ++ | − | − |
U69108 | TRAF5 | Signaling; TNFR-associated protein | ++ | − | − |
X12517 | SNRPC | mRNA splicing | ++ | − | − |
X52056 | SPI1 | Transcription; ets family | ++ | − | − |
X68149 | BLR1 | Signaling; cxc receptor | ++ | − | − |
X74301 | CIITA | Transcription; adaptor | ++ | − | − |
X75042 | REL | Transcription; rel/dorsal family | ++ | − | − |
L00058 | MYC | Transcription; bHLHZip | ++ | − | ++ |
M36067 | LIG1 | DNA ligase | ++ | + | + |
M82882 | ELF1 | Transcription; ets family | ++ | + | + |
S76617 | BLK | Signaling; kinase | ++ | + | + |
U47414 | CCNG2 | Cell cycle; cyclin G | ++ | + | + |
U61167 | SH3D1B | Unknown; SH3-containing protein | ++ | + | + |
X61587 | ARHG | Signaling; Rho G | ++ | + | + |
Z35278 | RUNX3 | Transcription; contains runt domain | ++ | + | + |
U89922 | LTB | Signaling; TNF-c | ++++ | + | + |
M34458 | LMNB1 | Cytoskeletal matrix | +++ | + | − |
U90651 | EED | Transcription; repression; PcG | +++ | + | + |
X69111 | ID3 | Transcription; repression; bHLH | +++ | + | + |
X52425 | IL4R | Signaling; cytokine receptor | +++ | ++ | − |
Z35227 | ARHH | Signaling; Rho H | +++ | ++ | + |
U89922 | LTB | Signaling; TNF-c | ++++ | + | + |
U05340 | CDC20 | Cell cycle; activator of APC | ++++ | ++ | − |
X66079 | SPIB | Transcription;ets family | ++++ | ++ | − |
Accession no. . | Symbol . | Function . | Quantitative gene expression . | ||
---|---|---|---|---|---|
TBCs . | TPCs . | BPCs . | |||
U60519 | CASP10 | Apoptosis | − | + | ++ |
X53586 | ITGA6 | Adhesion | − | + | ++ |
U04735 | STCH | Chaperone | + | ++ | ++ |
L13689 | BMI1 | Transcription; repressor; PcG | + | ++ | +++ |
L34657 | PECAM1 | Adhesion | + | ++ | +++ |
U52682 | IRF4 | Transcription; IRF family | + | +++ | +++ |
M31627 | XBP1 | Transcription; bZip family | +++ | ++++ | ++++ |
AB000410 | OGG1 | DNA glycosylase | + | − | − |
D87432 | SLC7A6 | Solute transporter | + | − | − |
J04101 | ETS1 | Transcription; etsfamily | + | − | − |
L38820 | CDID | Immunity | + | − | − |
M28827 | CDIC | Immunity | + | − | − |
M55542 | GBP1 | Signaling; GTP binding | + | − | − |
M81182 | ABCD3 | ABC transporter | + | − | − |
M85085 | CSTF2 | mRNA cleavage stimulating factor | + | − | − |
U74612 | FOXM1 | Transcription; fork-head family | + | − | − |
U84720 | RAE1 | RNA export | + | − | − |
V00574 | HRAS | Signaling; GTP-binding protein | + | − | − |
X02910 | TNF | Signaling; TNFα | + | − | − |
X63741 | EGR3 | Transcription;egr family | + | − | − |
X93512 | TERF2 | Telomere repeat binding protein | + | − | − |
Z36714 | CCNF | Cell cycle; cyclin F | + | − | − |
AB000409 | MNK1 | Signaling; kinase | + | − | + |
M33308 | VCL | Cytoskeleton | + | − | ++ |
D16480 | HADHA | Mitochondrial oxidation | ++ | − | − |
M63488 | RPA1 | DNA replication/repair | ++ | − | − |
U03911 | MSH2 | DNA repair | ++ | − | − |
U69108 | TRAF5 | Signaling; TNFR-associated protein | ++ | − | − |
X12517 | SNRPC | mRNA splicing | ++ | − | − |
X52056 | SPI1 | Transcription; ets family | ++ | − | − |
X68149 | BLR1 | Signaling; cxc receptor | ++ | − | − |
X74301 | CIITA | Transcription; adaptor | ++ | − | − |
X75042 | REL | Transcription; rel/dorsal family | ++ | − | − |
L00058 | MYC | Transcription; bHLHZip | ++ | − | ++ |
M36067 | LIG1 | DNA ligase | ++ | + | + |
M82882 | ELF1 | Transcription; ets family | ++ | + | + |
S76617 | BLK | Signaling; kinase | ++ | + | + |
U47414 | CCNG2 | Cell cycle; cyclin G | ++ | + | + |
U61167 | SH3D1B | Unknown; SH3-containing protein | ++ | + | + |
X61587 | ARHG | Signaling; Rho G | ++ | + | + |
Z35278 | RUNX3 | Transcription; contains runt domain | ++ | + | + |
U89922 | LTB | Signaling; TNF-c | ++++ | + | + |
M34458 | LMNB1 | Cytoskeletal matrix | +++ | + | − |
U90651 | EED | Transcription; repression; PcG | +++ | + | + |
X69111 | ID3 | Transcription; repression; bHLH | +++ | + | + |
X52425 | IL4R | Signaling; cytokine receptor | +++ | ++ | − |
Z35227 | ARHH | Signaling; Rho H | +++ | ++ | + |
U89922 | LTB | Signaling; TNF-c | ++++ | + | + |
U05340 | CDC20 | Cell cycle; activator of APC | ++++ | ++ | − |
X66079 | SPIB | Transcription;ets family | ++++ | ++ | − |
Quantitative gene expression (QGE) was defined as being at 1 of 5 levels. A gene was “−” if all the samples in the group had an absent absolute call (AC), “+” when all samples had present AC and average difference call (AD) < 1000, “++” when all samples had present AC and AD between 1000 and 5000, “+++” when all samples had present AC and AD between 5000 and 10 000, and “++++” when all samples had present AC and AD > 10 000. Up-regulated LDGs (n = 7) in the tonsil BC to tonsil PC transition are listed first. A hierarchy in the listing of genes was established such that QGE (5 expression levels) increases from top to bottom and from left to right for up-regulated genes and increases from top to bottom and decreases from left to right for down-regulated genes. Although the expression patterns of bone marrow PCs were not used to derive the list of EDGs, the gene expression levels in these cells are provided for reference.
Accession numbers are GenBank accession numbers corresponding to the Affymetrix GeneChip probe set for the given gene. Symbols are HUGO-approved gene symbols. TBCs indicates CD19-enriched tonsil BCs; TPCs, CD138-enriched tonsil PCs; BPCs, CD138-enriched bone marrow PCs.