Estimates of nucleotide diversity and average heterozygosity for VCAM1
| Region sequenced . | Base pairs screened . | Variant sites . | θ × 10−4 (SD) . | π × 10−4(SD) . | Tajima D . |
|---|---|---|---|---|---|
| 5′ upstream3-150 | 2258 | 17 | 15.2 (5.2) | 8.6 (0.8) | −1.26 |
| cDNA | 3103 | 15 | 9.8 (3.4) | 5.2 (0.7) | −1.32 |
| Total base pairs screened3-151 | 5962 | 33 | 11.2 (3.4) | 6.6 (0.5) | −1.28 |
| Region sequenced . | Base pairs screened . | Variant sites . | θ × 10−4 (SD) . | π × 10−4(SD) . | Tajima D . |
|---|---|---|---|---|---|
| 5′ upstream3-150 | 2258 | 17 | 15.2 (5.2) | 8.6 (0.8) | −1.26 |
| cDNA | 3103 | 15 | 9.8 (3.4) | 5.2 (0.7) | −1.32 |
| Total base pairs screened3-151 | 5962 | 33 | 11.2 (3.4) | 6.6 (0.5) | −1.28 |
P values for all calculations of the Tajima D statistic are > .10, indicating that the value of D is not significantly different from the expected value of 0 for neutral mutations in a population at equilibrium. SD indicates standard deviation.
Defined as all bases upstream of the ATG for this analysis including 124 bp of the published cDNA.
Includes 2258 bp of the 5′ upstream region (including 124 bp of the cDNA), the entire coding region (cDNA XM_035776), 200 bp downstream of the 3′ end of the cDNA, and some intronic regions.