Table 1.

Primary (diagnostic), PDX T-ALL samples and cell lines analyzed and their maturation stage

SampleSample typeBlast frequencyEGIL classificationSubgroupIL7R-JAK-STAT mutation*JAK-STAT constitutive activation?
T-ALL #01 Primary 90 T-II TAL/LMO IL7R wt n.d. 
T-ALL #02 Primary 90 T-III TLX IL7R wt n.d. 
T-ALL #03 Primary 87 T-II n.d. IL7R wt n.d. 
T-ALL #04 Primary 96 T-IV n.d. IL7R wt n.d. 
T-ALL #05 PDX 90 T-II n.d IL7R wt No 
T-ALL #06 PDX 85 T-III TAL/LMO IL7R wt No 
TAIL7 Cell line 100 T-II TAL/LMO IL7R wt No 
HPB-ALL Cell line 100 T-III TLX IL7R wt No 
     JAK1 E966V  
     JAK1 Del(966-989)  
SampleSample typeBlast frequencyEGIL classificationSubgroupIL7R-JAK-STAT mutation*JAK-STAT constitutive activation?
T-ALL #01 Primary 90 T-II TAL/LMO IL7R wt n.d. 
T-ALL #02 Primary 90 T-III TLX IL7R wt n.d. 
T-ALL #03 Primary 87 T-II n.d. IL7R wt n.d. 
T-ALL #04 Primary 96 T-IV n.d. IL7R wt n.d. 
T-ALL #05 PDX 90 T-II n.d IL7R wt No 
T-ALL #06 PDX 85 T-III TAL/LMO IL7R wt No 
TAIL7 Cell line 100 T-II TAL/LMO IL7R wt No 
HPB-ALL Cell line 100 T-III TLX IL7R wt No 
     JAK1 E966V  
     JAK1 Del(966-989)  

European Group for the Immunological Characterization of Leukemias (EGIL) classification94 : Pro-T (T-I), CD7+, cytoplasmic CD3+; Pre-T (T-II), CD7+, CD2+, and/or CD5+, cytoplasmic CD3+; Cortical-T (T-III), CD1a+, cytoplasmic or surface CD3+; Mature-T (T-IV), CD1a, surface CD3+.

n.d., not determined; LMO, LIM domain only; TAL, T-cell acute lymphocytic leukemia; TLX, T-cell leukemia homeobox; wt, wild-type.

*

Indicated only genes for which mutational status is known.

Mutations do not confer constitutive activity.95 

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