Identifications of scRNAseq clusters at 3 levels of granularity
| Lineage_ID . | General_ID . | Precise_ID . | |||
|---|---|---|---|---|---|
| ID . | n . | ID . | n . | ID . | n . |
| Neutrophil | 11 262 | Late neutrotime neutrophil | 4960 | Late neutrotime neutrophil_2 | 2010 |
| Late neutrotime neutrophil_3 | 1537 | ||||
| Late neutrotime neutrophil_1 | 1413 | ||||
| Early neutrotime neutrophil | 3709 | Early neutrotime neutrophil_2 | 1858 | ||
| Early neutrotime neutrophil_1 | 1804 | ||||
| Early neutrotime neutrophil_3 | 47 | ||||
| Mid neutrotime neutrophil | 2036 | Mid neutrotime neutrophil_1 | 1766 | ||
| Mid neutrotime neutrophil_2 | 185 | ||||
| Mid neutrotime neutrophil_3 | 85 | ||||
| Mature neutrophil | 557 | Activated mature neutrophil | 557 | ||
| Eosinophil | 5 755 | Mature eosinophil | 3400 | Mature eosinophil_1 | 2151 |
| Mature eosinophil_2 | 1249 | ||||
| Eosinophil progenitor | 1760 | Eosinophil progenitor | 1338 | ||
| Actively replicating eosinophil progenitor | 422 | ||||
| Immature eosinophil | 595 | Immature eosinophil | 595 | ||
| B cell | 4 858 | B cell | 2480 | Naïve B cell | 1897 |
| Immature B cell | 583 | ||||
| Pre–B cell | 1699 | Pre–B cell_1 | 983 | ||
| Pre–B cell_2 | 716 | ||||
| Pro–B cell | 679 | Late pro–B cell | 441 | ||
| Early pro–B cell | 238 | ||||
| Erythrocyte | 3 973 | Proerythroblast | 2268 | Proerythroblast_1 | 1634 |
| Proerythroblast_2 | 634 | ||||
| Erythroblast | 1584 | Basophilic erythroblast | 1236 | ||
| Orthochromatic erythroblast | 348 | ||||
| Megakaryocyte-erythrocyte precursor | 121 | Megakaryocyte-erythrocyte precursor | 121 | ||
| Monocyte | 3 579 | Monocyte | 2502 | Ly6C-hi monocyte | 1964 |
| Ly6C-lo monocyte | 492 | ||||
| Activated Ly6C-hi monocyte | 46 | ||||
| Promonocyte | 1077 | Late promonocyte | 730 | ||
| Early promonocyte | 347 | ||||
| Macrophage | 2 428 | Macrophage | 2428 | Macrophage_1 | 2387 |
| Macrophage_2 | 41 | ||||
| Low confidence | 1 623 | Low confidence | 1623 | Low confidence_1 | 584 |
| Low confidence_2 | 525 | ||||
| Low confidence_3 | 413 | ||||
| Low confidence_4 | 101 | ||||
| Natural killer/T cell | 937 | Natural killer T cell | 384 | Natural killer T cell | 384 |
| Natural killer cell | 379 | Natural killer cell | 379 | ||
| T cell | 558 | T cell | 510 | ||
| Regulatory T cell | 48 | ||||
| Precursor | 1 064 | Multipotent progenitor | 617 | Multipotent progenitor_1 | 314 |
| Multipotent progenitor_2 | 187 | ||||
| Multipotent progenitor_3 | 116 | ||||
| Granulocyte-monocyte precursor | 447 | Granulocyte-monocyte precursor | 447 | ||
| Dendritic cell | 816 | Dendritic cell | 816 | Conventional dendritic cell | 414 |
| Plasmacytoid dendritic cell | 402 | ||||
| Mesenchymal stromal cell | 351 | Mesenchymal stromal cell | 351 | Mesenchymal stromal cell | 351 |
| Basophil | 299 | Basophil | 299 | Basophil | 299 |
| Endothelial cell | 105 | Endothelial cell | 105 | Endothelial cell | 105 |
| Lineage_ID . | General_ID . | Precise_ID . | |||
|---|---|---|---|---|---|
| ID . | n . | ID . | n . | ID . | n . |
| Neutrophil | 11 262 | Late neutrotime neutrophil | 4960 | Late neutrotime neutrophil_2 | 2010 |
| Late neutrotime neutrophil_3 | 1537 | ||||
| Late neutrotime neutrophil_1 | 1413 | ||||
| Early neutrotime neutrophil | 3709 | Early neutrotime neutrophil_2 | 1858 | ||
| Early neutrotime neutrophil_1 | 1804 | ||||
| Early neutrotime neutrophil_3 | 47 | ||||
| Mid neutrotime neutrophil | 2036 | Mid neutrotime neutrophil_1 | 1766 | ||
| Mid neutrotime neutrophil_2 | 185 | ||||
| Mid neutrotime neutrophil_3 | 85 | ||||
| Mature neutrophil | 557 | Activated mature neutrophil | 557 | ||
| Eosinophil | 5 755 | Mature eosinophil | 3400 | Mature eosinophil_1 | 2151 |
| Mature eosinophil_2 | 1249 | ||||
| Eosinophil progenitor | 1760 | Eosinophil progenitor | 1338 | ||
| Actively replicating eosinophil progenitor | 422 | ||||
| Immature eosinophil | 595 | Immature eosinophil | 595 | ||
| B cell | 4 858 | B cell | 2480 | Naïve B cell | 1897 |
| Immature B cell | 583 | ||||
| Pre–B cell | 1699 | Pre–B cell_1 | 983 | ||
| Pre–B cell_2 | 716 | ||||
| Pro–B cell | 679 | Late pro–B cell | 441 | ||
| Early pro–B cell | 238 | ||||
| Erythrocyte | 3 973 | Proerythroblast | 2268 | Proerythroblast_1 | 1634 |
| Proerythroblast_2 | 634 | ||||
| Erythroblast | 1584 | Basophilic erythroblast | 1236 | ||
| Orthochromatic erythroblast | 348 | ||||
| Megakaryocyte-erythrocyte precursor | 121 | Megakaryocyte-erythrocyte precursor | 121 | ||
| Monocyte | 3 579 | Monocyte | 2502 | Ly6C-hi monocyte | 1964 |
| Ly6C-lo monocyte | 492 | ||||
| Activated Ly6C-hi monocyte | 46 | ||||
| Promonocyte | 1077 | Late promonocyte | 730 | ||
| Early promonocyte | 347 | ||||
| Macrophage | 2 428 | Macrophage | 2428 | Macrophage_1 | 2387 |
| Macrophage_2 | 41 | ||||
| Low confidence | 1 623 | Low confidence | 1623 | Low confidence_1 | 584 |
| Low confidence_2 | 525 | ||||
| Low confidence_3 | 413 | ||||
| Low confidence_4 | 101 | ||||
| Natural killer/T cell | 937 | Natural killer T cell | 384 | Natural killer T cell | 384 |
| Natural killer cell | 379 | Natural killer cell | 379 | ||
| T cell | 558 | T cell | 510 | ||
| Regulatory T cell | 48 | ||||
| Precursor | 1 064 | Multipotent progenitor | 617 | Multipotent progenitor_1 | 314 |
| Multipotent progenitor_2 | 187 | ||||
| Multipotent progenitor_3 | 116 | ||||
| Granulocyte-monocyte precursor | 447 | Granulocyte-monocyte precursor | 447 | ||
| Dendritic cell | 816 | Dendritic cell | 816 | Conventional dendritic cell | 414 |
| Plasmacytoid dendritic cell | 402 | ||||
| Mesenchymal stromal cell | 351 | Mesenchymal stromal cell | 351 | Mesenchymal stromal cell | 351 |
| Basophil | 299 | Basophil | 299 | Basophil | 299 |
| Endothelial cell | 105 | Endothelial cell | 105 | Endothelial cell | 105 |
Single cells from KA- or VNAM-treated murine BM were clustered using Seurat and then assigned identities at 3 levels: precise, general, and lineage. The number of cells per each ID is indicated.
hi, high; ID, identity; lo, low.