Table 2.

Prognostically informative mutations of most frequent detection in patients with MPN

GenePolycythemia veraEssential thrombocythemiaPrimary myelofibrosis“Secondary” myelofibrosis
JAK2 V617F  • Higher risk of thrombosis (included in revised IPSET) • Intermediate prognosis and higher risk of thrombosis compared to patients with CALR mutation  
CALR  • Lower risk of thrombosis compared to JAK2 mutated CALR type 1/like: improved survival compared to JAK2 V617F and “triple negative”
• Improved outcome after SCT
• Absence of CALR type 1/like included in MIPSS70/plus v2.0
• Absence of CALR mutation included in MYSEC-PM and MTSS scores 
• Improved OS compared to JAK2 V617F and “triple negative”
• Improved outcome after SCT
• Absence of CALR mutation included in MYSEC-PM and MTSS scores 
MPL W515   • Intermediate prognosis and higher risk of thrombosis compared to patients with CALR mutation  
Triple negative”   • Inferior OS and LFS compared to JAK2/CALR mutation (especially in pre-PMF)  
JAK2 exon 12 • Similar rates of thrombosis, evolution to post–PV-MF and BP, and survival to JAK2 V617F    
ASXL1 • “Adverse variant” associated with inferior OS and MFS
• Included in MIPSS-PV 
 • “HMR variant” associated with inferior OS/LFS, lower PFS following SCT
• Included in MIPSS70/plus v2.0 and GIPSS 
 
EZH2  • “Adverse variant” associated with inferior OS/LFS • “HMR variant” associated with inferior OS
• Included in MIPSS70/plus v2.0 
 
IDH1
IDH2 
IDH1: “adverse variant” associated with inferior OS and LFS IDH2: “adverse variant” associated with inferior OS • “HMR variants” associated with inferior OS/LFS and as lower PFS following SCT
• Included in MIPSS70/plus v2.0 
• “Adverse variant” associated with lower PFS following SCT 
SRSF2 • “Adverse variant” associated with inferior OS
• Included in MIPSS-PV 
• “Adverse variant” associated with inferior OS/LFS
• Included in MIPSS-ET 
• “HMR variant” associated with inferior OS/LFS
• Included in MIPSS70/plus v2.0 and GIPSS 
 
U2AF1 Q157   • “HMR variant” associated inferior OS
• Included in MIPSS70/plus v2.0 and GIPSS 
 
U2AF1 or DNMT3A or CBL  U2AF1: “adverse variant” associated with inferior OS/MFS
• Included in MIPSS-ET 
• “Adverse variant” associated with worse OS in SCT • “Adverse variant” associated with worse OS in SCT 
RUNX1 • “Adverse variant” associated with inferior OS and LFS • “Adverse variant” associated with inferior OS/LFS   
TP53 • “Adverse variant” associated with inferior LFS • “Adverse variant” associated with inferior OS/LFS
• Included in MIPSS-ET 
• “Adverse variant” associated with leukemic transformation  
LNK (SH2B3 • “Adverse variant” associated with inferior OS   
SF3B1  • “Adverse variant” associated with inferior OS and MFS
• Included in MIPSS-ET 
  
RAS   • “Adverse variant” associated with inferior OS
• Associated with JAKi-refractoriness 
 
GenePolycythemia veraEssential thrombocythemiaPrimary myelofibrosis“Secondary” myelofibrosis
JAK2 V617F  • Higher risk of thrombosis (included in revised IPSET) • Intermediate prognosis and higher risk of thrombosis compared to patients with CALR mutation  
CALR  • Lower risk of thrombosis compared to JAK2 mutated CALR type 1/like: improved survival compared to JAK2 V617F and “triple negative”
• Improved outcome after SCT
• Absence of CALR type 1/like included in MIPSS70/plus v2.0
• Absence of CALR mutation included in MYSEC-PM and MTSS scores 
• Improved OS compared to JAK2 V617F and “triple negative”
• Improved outcome after SCT
• Absence of CALR mutation included in MYSEC-PM and MTSS scores 
MPL W515   • Intermediate prognosis and higher risk of thrombosis compared to patients with CALR mutation  
Triple negative”   • Inferior OS and LFS compared to JAK2/CALR mutation (especially in pre-PMF)  
JAK2 exon 12 • Similar rates of thrombosis, evolution to post–PV-MF and BP, and survival to JAK2 V617F    
ASXL1 • “Adverse variant” associated with inferior OS and MFS
• Included in MIPSS-PV 
 • “HMR variant” associated with inferior OS/LFS, lower PFS following SCT
• Included in MIPSS70/plus v2.0 and GIPSS 
 
EZH2  • “Adverse variant” associated with inferior OS/LFS • “HMR variant” associated with inferior OS
• Included in MIPSS70/plus v2.0 
 
IDH1
IDH2 
IDH1: “adverse variant” associated with inferior OS and LFS IDH2: “adverse variant” associated with inferior OS • “HMR variants” associated with inferior OS/LFS and as lower PFS following SCT
• Included in MIPSS70/plus v2.0 
• “Adverse variant” associated with lower PFS following SCT 
SRSF2 • “Adverse variant” associated with inferior OS
• Included in MIPSS-PV 
• “Adverse variant” associated with inferior OS/LFS
• Included in MIPSS-ET 
• “HMR variant” associated with inferior OS/LFS
• Included in MIPSS70/plus v2.0 and GIPSS 
 
U2AF1 Q157   • “HMR variant” associated inferior OS
• Included in MIPSS70/plus v2.0 and GIPSS 
 
U2AF1 or DNMT3A or CBL  U2AF1: “adverse variant” associated with inferior OS/MFS
• Included in MIPSS-ET 
• “Adverse variant” associated with worse OS in SCT • “Adverse variant” associated with worse OS in SCT 
RUNX1 • “Adverse variant” associated with inferior OS and LFS • “Adverse variant” associated with inferior OS/LFS   
TP53 • “Adverse variant” associated with inferior LFS • “Adverse variant” associated with inferior OS/LFS
• Included in MIPSS-ET 
• “Adverse variant” associated with leukemic transformation  
LNK (SH2B3 • “Adverse variant” associated with inferior OS   
SF3B1  • “Adverse variant” associated with inferior OS and MFS
• Included in MIPSS-ET 
  
RAS   • “Adverse variant” associated with inferior OS
• Associated with JAKi-refractoriness 
 

LFS, leukemia-free survival; MFS, myelofibrosis-free survival; PFS, progression-free survival.

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